When an alignment is run, and more than one component is generated, it gets named something like: Component 0, Component 1, Component 2, etc.
If another alignment is run after that, the components are named something like:
Component 0 (1), Component 1 (1), Component 2 (1), etc.
After a few passes like this, it can get really difficult to keep track of which components are being produced from which alignments - especially if some components get deleted between alignments.
Is there a way we could pass a command in CLI to name all of the components generated from an alignment to all match? something like:
First Alignment: NameHere 0, 1, 2, etc.
Second Alignment: DifferentNameHere 0, 1, 2, etc.
Third Alignment: AnotherNameHere 0, 1, 2, etc.
Would make it much easier to know which components came from where. I'm not finding a way to do this from my searching so far... if it's not possible, please consider it a feature request. Thank you!
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